Overview
The Nomura Research Group is focused on reimagining druggability using chemical biology platforms to develop transformative medicines.
How we do it
One of the biggest challenges facing drug discovery is that >90 % of the proteome is currently considered “undruggable” because most proteins do not possess known binding pockets or “ligandable hotspots” that can be pharmacologically and functionally targeted for therapeutic benefit. Tackling the undruggable proteome requires the development of innovative technologies for ligand discovery AND the discovery of novel therapeutic modalities to functionally manipulate the undruggable proteome for therapeutic benefit. The Nomura Research Group is focused on reimagining druggability by advancing and applying chemoproteomic platforms to tackle the undruggable proteome, towards developing next-generation therapies and therapeutic modalities for human diseases. Our research is focused on three major themes to tackle the undruggable proteome—ligand discovery, expanding the scope of targeted protein degradation platforms, and developing new therapeutic modalities—for developing next-generation disease therapies.
Chemoproteomics-Enabled Covalent Ligand Discovery Against the Undruggable Proteome
Chemoproteomics-Enabled Covalent Ligand Discovery against the Undruggable Proteome
The central challenge in modern drug discovery is that the vast majority of disease-driving proteins remain undruggable by conventional small molecules. Our laboratory develops chemoproteomic technologies to systematically uncover cryptic ligandable hotspots throughout the human proteome and transform these previously inaccessible proteins into tractable therapeutic targets. Using quantitative chemoproteomics, we have mapped more than 100,000 ligandable sites across over 16,000 human proteins, including ligandable hotspots within the majority of genetically linked cancer drivers. These maps provide a foundation for discovering covalent ligands against transcription factors, intrinsically disordered proteins, signaling proteins, and other historically undruggable targets. We integrate large-scale covalent ligand screening with chemoproteomic target deconvolution to rapidly identify functional covalent ligands, define their proteome-wide selectivity, elucidate mechanisms of action, and optimize therapeutic leads. By combining synthetic chemistry, chemical biology, proteomics, and disease biology, our goal is to establish a generalizable platform for developing first-in-class therapeutics against the undruggable proteome.
Sulfinyl aziridines as stereoselective covalent destabilizing degraders of the oncogenic transcription factor MYC
Rosen HT*, Li K*, Stieger CE, Li E, Currier B, Brittain SM, Garcia FJ, Beard DC, Jones MD, Haenni-Holzinger S, Dovala D, McKenna JM, Schirle M, Maimone TJ#, Nomura DK#.
Angewandte Chemie International Edition, 2025, doi: 10.1002/anie.202508518. PMID 400999784 (*co-first authors; # co-corresponding authors)
Development of second-generation acyl silane photoaffinity probes for cellular chemoproteomic profiling
Page ACS*, Orr LM, Meyers ML, Belcher BP, Coffey TG, Scholz SO, Cismoski S, Nomura DK**, Toste FD
ACS Chemical Biology, 2025, https://doi.org/10.1021/acschembio.5c00396. PMID 41076584 (*co-first authors; **co-corresponding authors)
Covalent Modulators of Immune Regulatory Transcription Factors IRF8 and IRF5
Do Cong T, Chan H, Greene J, Sabaat S, Ludwig C, Abell NS, Albert ML, Kosuri S, Nomura DK
BioRxiv, 2026, doi: https://doi.org/10.1101/2025.08.03.668300.
DCAF16-based covalent degradative handles for the modular design of degraders
Orr LM, Tomlinson SJ, Grupe HR, Lim M, Ho E, Yilmaz H, Zhou G, Chie-Leon B, Olzmann JA*, Nomura DK*.
ACS Central Science, 2025, doi: 10.1021/acscentsci.5c00959. (*co-corresponding authors)
Covalent Destabilizing Degrader of AR and AR-V7 in Androgen-Independent Prostate Cancer Cells
Zammit CM*, Nadel CM*, Lin Y, Koirala S, Ahani E, Potts PR(#), Nomura DK(#)
JACS, 2025, 147, 20512-20524. PMID 40490871 (*co-first authors; # co-corresponding authors)
Targeted Protein Localization by Covalent 14-3-3 Recruitment
Shao Q, Duong TN, Park I, Orr LM, Nomura DK
JACS, 2024, https://doi.org/10.1021/jacs.3c12389. PMID 39196545
Covalent degrader of the oncogenic transcription factor b-catenin
Gowans FA*, Forte N*, Hatcher J, Huang OW, Wang Y, Altamirano Poblano BE, Wertz IE, Nomura DK
JACS, 2024, 146, 16856–16865. PMID 38848252 (*co-first authorship)
Rational Chemical Design of Molecular Glue Degraders
Toriki ES*, Papatzimas JW*, Nishikawa K, Dovala D, Frank AO, Hesse MJ, Dankova D, Song J-G, Bruce-Smythe M, Struble H, Garcia FJ, Brittain SM, Kile AC, McGregor LM, McKenna JM, Tallarico JA, Schirle M, Nomura DK
ACS Central Science, 2023, 9, 915-926. (* co-first authorship)
(Novartis-Berkeley Translational Chemical Biology Institute paper)
Chemoproteomics-Enabled Discovery of a Covalent Molecular Glue Degrader Targeting NF-kB
King EA, Cho Y, Hsu, NS, Dovala D, McKenna JM, Tallarico JA, Schirle M, Nomura DK
Cell Chemical Biology, 2023, 30, 394-402. PMID 36898369
(Novartis-Berkeley Translational Chemical Biology Institute paper)
Advances in covalent drug discovery
Boike L*, Henning NJ*, Nomura DK
Nature Reviews Drug Discovery, 2022, 21, 881-898. PMID 36008483 (*co-first authors)
Reimagining Druggability using Chemoproteomic Platforms
Spradlin JN, Zhang E, Nomura DK
Accounts of Chemical Research, 2021, 54, 1801-1813. PMID 33733731
Chemoproteomics-enabled ligand discovery of covalent RNF114-based degraders that mimic natural product function
Luo M*, Spradlin JN*, Boike L, Tong B, Brittain SM, McKenna JM, Tallarico JA, Schirle M, Maimone TJ#, Nomura DK#.
Cell Chemical Biology, 2021, 28, 559-566. PMID 33513350 (*co-first authorship, # co-corresponding authorship)
(Novartis-Berkeley Center for Proteomics and Chemistry Technologies paper)
Discovery of a functional covalent ligand targeting an intrinsically disordered cysteine within MYC
Boike L*, Cioffi AG*, Majewski FC, Co J, Henning NJ, Jones MD, Liu G, McKenna JM, Tallarico JA, Schirle M, Nomura DK.
Cell Chemical Biology, 2021, 28, 4-13. PMID 32966806 (*co-first authorship)
(Novartis-Berkeley Center for Proteomics and Chemistry Technologies paper)
Manumycin polyketides act as molecular glues between UBR7 and P53
Isobe Y, Okumura M, White R, McGregor LM, Brittain SM, Jones MD, Liang X, White R, Forrester W, McKenna JM, Tallarico JA, Schirle M, Maimone TJ*, Nomura DK*
Nature Chemical Biology, 2020, 16, 1189-1198. PMID 32572277 (*co-corresponding author) (Novartis-Berkeley Center for Proteomics and Chemistry Technologies paper)
Covalent targeting of the vacuolar H+-ATPase activates autophagy via mTORC1 inhibition
Chung CY-S*, Shin HR*, Berdan CA, Ford B, Ward CC, Olzmann JA, Zoncu R#, Nomura DK#
Nature Chemical Biology, 2019, 15, 776-785. PMID 31285595 (*co-first authorship; #co-corresponding authorship) (Novartis-Berkeley Center for Proteomics and Chemistry Technologies paper)
Harnessing the anti-cancer natural product nimbolide for targeted protein degradation
Spradlin JN, Hu X, Ward CC, Brittain SM, Jones MD, Ou L, To M, Proudfoot A, Ornelas E, Woldegiorgis M, Olzmann JA, Bussiere DE, Thomas JR, Tallarico JA, McKenna JM, Schirle M, Maimone TJ*, Nomura DK*
Nature Chemical Biology, 2019, 15, 747-755. PMID 31209351 (*co-corresponding authors) (Novartis-Berkeley Center for Proteomics and Chemistry Technologies paper)
Covalent ligand screening uncovers a RNF4 E3 ligase recruiter for targeted protein degradation applications
Ward CC, Kleinman JI, Brittain SM, Lee PS, Chung CYS, Kim K, Petri Y, Thomas JR, Tallarico JA, McKenna JM, Schirle M, Nomura DK
ACS Chemical Biology, 2019, 14, 2430-2440. PMID 31059647 (Novartis-Berkeley Center for Proteomics and Chemistry Technologies paper)
Parthenolide covalently targets and inhibits focal adhesion kinase in breast cancer cells
Berdan CA, Ho R, Lehtola HS, To M, Hu X, Huffman TR, Petri Y, Altobelli CR, Demeulenaere SG, Olzmann JA, Maimone TJ*, Nomura DK*
Cell Chemical Biology, 2019, 26, 1027-1035. PMID 31080076 (*co-corresponding authorship) (Novartis-Berkeley Center for Proteomics and Chemistry Technologies paper)
Target identification of bioactive covalently-acting natural products
Nomura DK* and Maimone TJ*
Current Topics in Microbiology and Immunology, 2018, 420, 351-374. PMID 30105423 (*co-corresponding authorship)
Covalent ligand discovery against druggable hotspots targeted by anti-cancer natural products
Grossman E*, Ward CC*, Spradlin JN, Bateman LA, Huffman TR, Miyamoto DK, Kleinman JI, Nomura DK
Cell Chemical Biology, 2017, 24, 1368-1376.e4. PMID 28919038 (*co-first authorship)
NHS-esters as versatile reactivity-based probes for mapping proteome-wide ligandable hotspots
Ward CC, Kleinman J, Nomura DK
ACS Chemical Biology, 2017, 12, 1478-1483. PMID 28445029
Chemoproteomics-enabled covalent ligand screen reveals a cysteine hotspot in Reticulon 4 that impairs ER morphology and cancer pathogenicity
Bateman LA#, Nguyen TB#, Roberts AM#, Miyamoto DK, Ku W-M, Huffman TR, Petri Y, Heslin MJ, Contreras CM, Skibola CF, Olzmann JA*, Nomura DK*
Chemical Communications, 2017, 53, 7234-7237. PMID 28352901 (#co-first authors; *co-corresponding author)
Expanding the Scope of Targeted Protein Degradation using Chemoproteomic Platforms
Expanding the Scope of Targeted Protein Degradation using Chemoproteomic Platforms
Targeted protein degradation (TPD) has transformed the way we think about drug discovery by enabling the selective elimination of disease-causing proteins rather than simply inhibiting their activity. Our laboratory develops next-generation TPD technologies that dramatically expand both the range of degradable proteins and the cellular machinery that can be harnessed for degradation. A major limitation of current degradation strategies is the scarcity of ligands for both undruggable targets and E3 ubiquitin ligases. We address both challenges through chemoproteomic discovery platforms that identify covalent ligands against disease-associated proteins as well as novel recruiters of E3 ligases and other components of the cellular protein quality control machinery. These discoveries enable the creation of innovative degrader architectures that extend beyond conventional PROTACs. In parallel, we are developing systematic approaches for discovering and engineering molecular glue degraders. Rather than relying on serendipitous discoveries, we combine chemoproteomics with phenotypic screening and proteome-wide target deconvolution to identify small molecules that induce productive protein-protein interactions and rapidly define the molecular basis of their activity. Together, these efforts establish new principles for programmable protein degradation across the proteome.
An optimized RNF126-targeting covalent handle for molecular glue degraders
Modi A, Toriki ES, Stieger CE, Lau EA, Song C, Chew A, Tsao A, Nishikawa K, McKenna JM, Nomura DK.
Bioorganic Medicinal Chemistry Letters, 2026, doi: 10.1016/j.bmcl.2026.130743. PMID 42492625
Induced Proximity-Based Therapeutic Modalities
King EA, Meyers M, Nomura DK
Nature Reviews Drug Discovery, 2026, 25, 175-203. PMID 41174297
Sulfinyl aziridines as stereoselective covalent destabilizing degraders of the oncogenic transcription factor MYC
Rosen HT*, Li K*, Stieger CE, Li E, Currier B, Brittain SM, Garcia FJ, Beard DC, Jones MD, Haenni-Holzinger S, Dovala D, McKenna JM, Schirle M, Maimone TJ#, Nomura DK#.
Angewandte Chemie International Edition, 2025, doi: 10.1002/anie.202508518. PMID 400999784 (*co-first authors; # co-corresponding authors)
Covalent Modulators of Immune Regulatory Transcription Factors IRF8 and IRF5
Do Cong T, Chan H, Greene J, Sabaat S, Ludwig C, Abell NS, Albert ML, Kosuri S, Nomura DK
BioRxiv, 2026, doi: https://doi.org/10.1101/2025.08.03.668300.
DCAF16-based covalent degradative handles for the modular design of degraders
Orr LM, Tomlinson SJ, Grupe HR, Lim M, Ho E, Yilmaz H, Zhou G, Chie-Leon B, Olzmann JA*, Nomura DK*.
ACS Central Science, 2025, doi: 10.1021/acscentsci.5c00959. (*co-corresponding authors)
Covalent Destabilizing Degrader of AR and AR-V7 in Androgen-Independent Prostate Cancer Cells
Zammit CM*, Nadel CM*, Lin Y, Koirala S, Ahani E, Potts PR(#), Nomura DK(#)
JACS, 2025, 147, 20512-20524. PMID 40490871 (*co-first authors; # co-corresponding authors)
Covalent degrader of the oncogenic transcription factor b-catenin
Gowans FA*, Forte N*, Hatcher J, Huang OW, Wang Y, Altamirano Poblano BE, Wertz IE, Nomura DK
JACS, 2024, 146, 16856–16865. PMID 38848252 (*co-first authorship)
DCAF16-based covalent handle for the rational design of monovalent degraders
Lim M*, Do Cong T*, Orr LM, Toriki ES, Kile AC, Lee E, Lin Y, Nomura DK
ACS Central Science, 2024, 10, 1318-1331. PMID 39071058 (*co-first authorship)
(Novartis-Berkeley Translational Chemical Biology Institute paper)
Exploiting the Cullin E3 ligase adaptor protein SKP1 for targeted protein degradation
Hong SH*, Divakaran A*, Osa A, Huang OW, Wertz IE, Nomura DK
ACS Chemical Biology, 2024, 19, 442-450. PMID 37904950. (*co-first authors)
Targeted protein degradation through recruitment of the CUL4 complex adaptor protein DDB1
Meyers M, Cismoski S, Panidapu A, Chie-Leon B, Nomura DK
ACS Chemical Biology, 2024, 19, 58-68. PMID 38192078
(Novartis-Berkeley Translational Chemical Biology Institute paper)
Rational Chemical Design of Molecular Glue Degraders
Toriki ES*, Papatzimas JW*, Nishikawa K, Dovala D, Frank AO, Hesse MJ, Dankova D, Song J-G, Bruce-Smythe M, Struble H, Garcia FJ, Brittain SM, Kile AC, McGregor LM, McKenna JM, Tallarico JA, Schirle M, Nomura DK
ACS Central Science, 2023, 9, 915-926. (* co-first authorship)
(Novartis-Berkeley Translational Chemical Biology Institute paper)
Chemoproteomics-Enabled Discovery of a Covalent Molecular Glue Degrader Targeting NF-kB
King EA, Cho Y, Hsu, NS, Dovala D, McKenna JM, Tallarico JA, Schirle M, Nomura DK
Cell Chemical Biology, 2023, 30, 394-402. PMID 36898369
(Novartis-Berkeley Translational Chemical Biology Institute paper)
Targeted Protein Degradation through E2 Recruitment
Forte N, Dovala D, Hesse MJ, McKenna JM, Tallarico JA, Schirle M, Nomura DK
ACS Chemical Biology, 2023, https://doi.org/10.1021/acschembio.3c00040. PMID 36940189
(Novartis-Berkeley Translational Chemical Biology Institute paper)
Ligandability of E3 Ligases for Targeted Protein Degradation Applications
Belcher B, Ward CC, Nomura DK
Biochemistry, 2023, 62, 588-600. PMID 34473924
Discovery of a covalent FEM1B recruiter for targeted protein degradation applications
Henning NJ*, Manford AG*, Spradlin JN, Brittain SM, Zhang E, McKenna JM, Tallarico JA, Schirle M, Rape M#, Nomura DK#
Discovery of a covalent FEM1B recruiter for targeted protein degradation applications.
JACS, 2022, 144, 701-708. PMID 34994556 (*co-first authorship; #co-corresponding authorship)
(Novartis-Berkeley Center for Proteomics and Chemistry Technologies paper)
Reimagining Druggability using Chemoproteomic Platforms
Spradlin JN, Zhang E, Nomura DK
Accounts of Chemical Research, 2021, 54, 1801-1813. PMID 33733731
Chemoproteomics-enabled ligand discovery of covalent RNF114-based degraders that mimic natural product function
Luo M*, Spradlin JN*, Boike L, Tong B, Brittain SM, McKenna JM, Tallarico JA, Schirle M, Maimone TJ#, Nomura DK#.
Cell Chemical Biology, 2021, 28, 559-566. PMID 33513350 (*co-first authorship, # co-corresponding authorship)
(Novartis-Berkeley Center for Proteomics and Chemistry Technologies paper)
Discovery of a functional covalent ligand targeting an intrinsically disordered cysteine within MYC
Boike L*, Cioffi AG*, Majewski FC, Co J, Henning NJ, Jones MD, Liu G, McKenna JM, Tallarico JA, Schirle M, Nomura DK.
Cell Chemical Biology, 2021, 28, 4-13. PMID 32966806 (*co-first authorship)
(Novartis-Berkeley Center for Proteomics and Chemistry Technologies paper)
Bardoxolone Conjugation Enables Targeted Protein Degradation of BRD4
Tong B*, Luo M*, Xie Y, Spradlin JN, Tallarico JA, McKenna JM, Schirle M, Maimone TJ#, Nomura DK#
Scientific Reports, 2020, 10, 15543. PMID 32968148 (*co-first authorship; # co-corresponding authorship) (Novartis-Berkeley Center for Proteomics and Chemistry Technologies paper)
Manumycin polyketides act as molecular glues between UBR7 and P53
Isobe Y, Okumura M, White R, McGregor LM, Brittain SM, Jones MD, Liang X, White R, Forrester W, McKenna JM, Tallarico JA, Schirle M, Maimone TJ*, Nomura DK*
Nature Chemical Biology, 2020, 16, 1189-1198. PMID 32572277 (*co-corresponding author) (Novartis-Berkeley Center for Proteomics and Chemistry Technologies paper)
A nimbolide-based kinase degrader preferentially degrades oncogenic BCR-ABL
Tong B*, Spradlin JN*, Novaes LFT, Zhang E, Hu X, Moeller M, Brittain SM, McGregor LM, McKenna JM, Tallarico JA, Schirle M, Maimone TJ#, Nomura DK#
ACS Chemical Biology, 2020, 15, 1788-1794. PMID 32568522 (*co-first authorship; # co-corresponding authorship) (Novartis-Berkeley Center for Proteomics and Chemistry Technologies paper)
Covalent targeting of the vacuolar H+-ATPase activates autophagy via mTORC1 inhibition
Chung CY-S*, Shin HR*, Berdan CA, Ford B, Ward CC, Olzmann JA, Zoncu R#, Nomura DK#
Nature Chemical Biology, 2019, 15, 776-785. PMID 31285595 (*co-first authorship; #co-corresponding authorship) (Novartis-Berkeley Center for Proteomics and Chemistry Technologies paper)
Harnessing the anti-cancer natural product nimbolide for targeted protein degradation
Spradlin JN, Hu X, Ward CC, Brittain SM, Jones MD, Ou L, To M, Proudfoot A, Ornelas E, Woldegiorgis M, Olzmann JA, Bussiere DE, Thomas JR, Tallarico JA, McKenna JM, Schirle M, Maimone TJ*, Nomura DK*
Nature Chemical Biology, 2019, 15, 747-755. PMID 31209351 (*co-corresponding authors) (Novartis-Berkeley Center for Proteomics and Chemistry Technologies paper)
Covalent ligand screening uncovers a RNF4 E3 ligase recruiter for targeted protein degradation applications
Ward CC, Kleinman JI, Brittain SM, Lee PS, Chung CYS, Kim K, Petri Y, Thomas JR, Tallarico JA, McKenna JM, Schirle M, Nomura DK
ACS Chemical Biology, 2019, 14, 2430-2440. PMID 31059647 (Novartis-Berkeley Center for Proteomics and Chemistry Technologies paper)
Discovering New Induced Proximity-Based Therapeutic Modalities
Discovering New Induced Proximity-Based Therapeutic Modalities
Induced proximity represents a fundamentally new paradigm for drug discovery. Rather than simply inhibiting or degrading proteins, induced proximity therapeutics create entirely new protein interactions that reprogram cellular function through gain-of-function mechanisms. Our laboratory is pioneering new classes of induced proximity therapeutics that extend far beyond targeted protein degradation. By combining chemoproteomics with heterobifunctional molecules and molecular glues, we develop technologies that recruit diverse cellular proteins and enzymes to rewire biology in programmable ways. These platforms enable transcriptional repression and activation, protein stabilization, signal rewiring, epigenetic reprogramming, and other emerging therapeutic modalities. A major focus of our research is the development of programmable transcriptional therapeutics that selectively reprogram gene expression through targeted recruitment of chromatin regulators and transcriptional machinery. More broadly, we seek to establish a comprehensive toolkit of induced proximity strategies capable of controlling virtually any protein function, ultimately creating entirely new therapeutic modalities for diseases that remain beyond the reach of conventional pharmacology.
Targeted transcriptional repression by induced proximity
Stieger CE, Chen X, Kuismi CC, Dovala D, Fuller D, Frank AO, Woldegiorgis M, Bruce-Smythe M, Wu F, Pizzato N, McKenna J, Johannessen C, Fodor BD, Schirle M, Nomura DK.
ACS Central Science, 2026, 12, 1008-1020. PMID 42500035
Discovery of Non-Degradative Covalent Molecular Glues for Transcriptional Reprogramming
Duong TN, Pandji E, Shao Q,* Nomura DK*.
BioRxiv, 2025, https://doi.org/10.64898/2025.12.12.694031. (**co-corresponding author)
Induced Proximity-Based Therapeutic Modalities
King EA, Meyers M, Nomura DK
Nature Reviews Drug Discovery, 2026, 25, 175-203. PMID 41174297
Targeted Protein Localization by Covalent 14-3-3 Recruitment
Shao Q, Duong TN, Park I, Orr LM, Nomura DK
JACS, 2024, https://doi.org/10.1021/jacs.3c12389. PMID 39196545
Rational Chemical Design of Molecular Glue Degraders
Toriki ES*, Papatzimas JW*, Nishikawa K, Dovala D, Frank AO, Hesse MJ, Dankova D, Song J-G, Bruce-Smythe M, Struble H, Garcia FJ, Brittain SM, Kile AC, McGregor LM, McKenna JM, Tallarico JA, Schirle M, Nomura DK
ACS Central Science, 2023, 9, 915-926. (* co-first authorship)
(Novartis-Berkeley Translational Chemical Biology Institute paper)
Deubiquitinase-Targeting Chimeras for Targeted Protein Stabilization
Henning NJ*, Boike L*, Spradlin JN, Ward CC, Liu G, Zhang E, Belcher BP, Brittain SM, Hesse M, Dovala D, McGregor LM, Veldez Misiolek R, Plasschaert LW, Rowlands DJ, Wang F, Frank AO, Fuller D, Estes AR, Randal KL, Panidapu A, McKenna JM, Tallarico JA, Schirle M, Nomura DK
Deubiquitinase-targeting chimeras for targeted protein stabilization.
Nature Chemical Biology, 2022, 18, 412-421. PMID 35210618 (* co-first authorship)
(Novartis-Berkeley Center for Proteomics and Chemistry Technologies paper)
Reimagining Druggability using Chemoproteomic Platforms
Spradlin JN, Zhang E, Nomura DK
Accounts of Chemical Research, 2021, 54, 1801-1813. PMID 33733731
Manumycin polyketides act as molecular glues between UBR7 and P53
Isobe Y, Okumura M, White R, McGregor LM, Brittain SM, Jones MD, Liang X, White R, Forrester W, McKenna JM, Tallarico JA, Schirle M, Maimone TJ*, Nomura DK*
Nature Chemical Biology, 2020, 16, 1189-1198. PMID 32572277 (*co-corresponding author) (Novartis-Berkeley Center for Proteomics and Chemistry Technologies paper)